SNP {MatrixEQTL} | R Documentation |
Artificial data set with genotype information for 15 markers across 15 samples.Columns of the file must match to those of the gene expression and covariates data sets.
snpnid | Sam_01 | Sam_02 | ... |
Snp_01 | 2 | 0 | ... |
Snp_02 | 0 | 1 | ... |
... | ... | ... | ... |
The package website: http://www.bios.unc.edu/research/genomic_software/Matrix_eQTL/
See Matrix_eQTL_engine
for reference and sample code.