Curriculum Vitae
Current work
2018-present Dissertation Completion Fellowship
Previous work
2007-2009: Research Assistant at the Department of Statistics, University of Iowa
participated in development and testing of the Bayesian geostatistical modeling of Gaussian processes using a reparameterized and marginalized posterior sampling
(RAMPS) algorithm and
GISolve
realization of the paralell version of the algorithm
Education
University of North Carolina, DrPH in Biostatistics, 2020
University of Iowa, MS in Statistics, 2007
Central College, BA in Mathematics, Computer Science, 2004
Publications
ORCID ID: 0000-0003-1575-5732
1. Giusti-Rodriguez, P, Xenakis, J, Crowley, JJ, Nonneman, RJ, DeCristo, DM, Ryan, A., Quackenbush, CR, Miller, DR, Shaw, GD, Zhabotynsky, V. and Sullivan, P
Antipsychotic behavioral phenotypes in the mouse Collaborative Cross recombinant inbred inter-crosses (RIX). BioRxiv (2019): 761353.
(under review Genetics) (2019) doi: 10.1101/761353
2. Zhabotynsky V, Sun W, Inoue K, Magnuson T, Calabrese M
A statistical method for joint estimation of cis-eQTLs and parent-of-origin effects using RNA-seq human data under family trio design. (2019)
Biometrics PMID: 30666629
3. Sun W, Bunn P, Jin C, Little P, Zhabotynsky V, Perou CM, Hayes DN, Chen M, Lin DY
The Association between Copy Number Aberration, DNA Methylation, and Gene Expression (2018)
Nucleic Acids Research doi: 10.1093/nar/gky131 PMID: 29529299
4. Sun W, Yufeng Liu, Crowley JJ, Chen TH, Zhou H, Chu H, Huang S, Kuan PF, Li Y, Miller D, Shaw G, Wu Y, Zhabotynsky V, McMillan L, Zou F, Sullivan PF, Pardo-Manuel de Villena F
IsoDOT Detects Differential RNA-isoform Expression/Usage with respect to a Categorical or Continuous Covariate with High Sensitivity and Specificity.(2015)
Journal of the American Statistical Association doi: 10.1080/01621459.2015.1040880
5. Crowley JJ, Zhabotynsky V, Sun W, Huang S, Pakatci I, Kim Y, Wang J, Morgan A, Calaway J, Aylor D, Yun Z, Bell T, Buus R, Calaway M, Didion J, Gooch T, Hansen S, Robinson N, Shaw G, Spence J, Quackenbush C, Barrick C, Xie Y, Valdar W, Lenarcic A, Wang W, Welsh C, Fu C, Zhang Z, Holt J, Guo Z, Threadgill D, Tarantino L, Miller D, Zou F, McMillan L, Sullivan PF, Pardo-Manuel de Villena F
Analyses of allele-specific gene expression in highly divergent mouse crosses identifies pervasive allelic imbalance. (2015)
Nature Genetics 47, 353–360 doi:10.1038/ng.3222. PMID: 25730764
6. Zou F, Sun W, Crowley JJ, Zhabotynsky V, Sullivan PF, and Pardo-Manuel de Villena F
A novel statistical approach for jointly analyzing RNA-Seq data from F1 reciprocal crosses and inbred lines(2014)
Genetics 197 (1), 389-399. PMID: 24561482
7. Collaborative Cross Consortium.
The Genome Architecture of the Collaborative Cross Mouse Genetic Reference Population. (2012)
Genetics 190(2):389-401. PMCID: PMC3276630
8. Sun W, Lee S, Zhabotynsky V, Zou F, Wright FA, Crowley JJ, Yun Z, Buus RJ, Miller DR, Wang J, McMillan L, Pardo-Manuel de Villena F, Sullivan PF (2012)
Transcriptome Atlases Of Mouse Brain Reveals Differential Expression Across Brain Regions And Genetic Backgrounds. (2012)
G3 (Bethesda): Genes| Genomes| Genetics 2 (2), 203-211. PMCID: PMC3284328
Presentations and Posters
1. Xenakis J, Kim KS, Zhabotynsky V, Mi X, Crowley JJ, Sullivan P, Pardo-Manuel De Villena F
A Statistical Model of Methylation Sequencing Data Identifies Novel Differentially Methylated CpG's and Provides Insights into the Role of Methylation in X-chromosome Inactivation and the Silencing of Transposable Elements (2019)
The 33th International Mammalian Genome Conference
2. Giusti Rodriguez P, Xenakis JG, Crowley JJ, Nonneman RJ, DeCristo DM, Ryan A, Quackenbush CR,Miller DR, Shaw GD, Zhabotynsky V, Sullivan PF, Fernando Pardo Manuel de Villena, Zou F
Antipsychotic behavioral phenotypes of Collaborative Cross recombinant inbred intercrosses (RIX) (2018)
The 32th International Mammalian Genome Conference
3. Zhabotynsky V, Hu YJ, Zou F, Sun W
eQTL Analysis Using Human RNA-seq Data with TReCASE and RASQUAL (2018)
ENAR 2018 Spring Meeting with IMS and sections of ASA
4. Zhabotynsky V, Sun W, Inoue K, Magnuson T, Calabrese M
Unbiased Estimation of Parent-of-Origin Effects Using RNA-seq Data from Human (2017)
ENAR 2017 Spring Meeting with IMS and sections of ASA
5. Peng XL, Zhabotynsky V, East MP, Voltzke KJ, Sprague D, Herrera Loeza SJ, Moffitt RA, Rashid NU, Graves LM, Johnson GJ, Yeh JJ
Kinome profiling in pancreatic cancer reveals subtype-specific drug (2017)
2017 UNC Lineberger Comprehensive Cancer Center Scientific Retreat
6. Sun W, Bunn P, Jin C, Little P, Zhabotynsky V, Perou CM, Hayes DN, Chen M, Lin D
Tissue Purity and cell composition challenges in estimation of association between somatic copy number aberration, DNA methylation and gene expression (2016)
2016 UNC Lineberger Annual Scientific Retreat
7. Xenakis JG, Zhabotynsky V, Zou F
A score statistic for testing variance components in the shared random effects setting with applications to a complex mouse study (2016)
2016 Joint Statistical Meetings
8. Zou F, Sun W, Crowley JJ, Zhabotynsky V, Sullivan PF, Pardo-Manuel de Villena F, Xenaxis J , Giuisti P
TReCASE: a powerful method to detect differential gene expression using total and allele specific RNA-seq data (2014)
The 12th Annual Centers of Excellence in Genomic Science Grantee Meeting
9. Crowley JJ, Zhabotynsky V, Sun W, Huang S, Pakatci I, Kim Y, Wang J, Morgan A, Calaway J, Aylor D, Yun Z, Bell T, Buus R, Calaway M, Didion J, Gooch T, Hansen S, Robinson N, Shaw G, Spence J, Quackenbush C, Barrick C, Xie Y, Valdar W, Lenarcic A, Wang W, Welsh C, Fu CP, Zhang Z, Holt J, Guo Z, Threadgill D, Tarantino L, Miller D, Zou F, McMillan L, Sullivan P, Pardo-Manuel de Villena F
Pervasive Allelic Imbalance Revealed By Allele-Specific Gene Expression In Highly Divergent Mouse Crosses (2013)
The 27th International Mammalian Genome Conference
10. Holt JM, Wang J, Zhabotynsky V, Kim Y, Crowley JJ, Zou F, Sullivan P, Pardo-Manuel de Villena F, McMillan L
A Visualization Tool For Exploring the Gene Expression Landscape in a Full Three-Founder Diallele (2013)
The 27th International Mammalian Genome Conference
Design modified on January 29th, 2011.